refactor: Cleanup git state - commit all staged changes

Major refactoring cleanup:
- Add new controller architecture (class-controller-*.php)
- Add new settings-v2 UI (views/settings-v2/)
- Add new CSS architecture (agentic-sidebar.css, tokens)
- Add esbuild build pipeline (scripts/build.js, package.json)
- Add composer dependencies (vendor/)
- Add frontend src directory (assets/js/src/index.jsx)
- Add documentation files
- Remove old/obsolete files (class-settings.php, old CSS)

This commits all pending changes from previous refactoring efforts.

vendor/phpdocumentor/guides/resources/template/tex/body/anchor.tex.twig

@@ -0,0 +1 @@
+\label{{ '{' }}{{ node.value }}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/body/code.tex.twig

@@ -0,0 +1,4 @@
+\lstset{language={{ node.language }}{{ '}'}}
+\begin{lstlisting}
+{{ node.value|raw }}
+\end{lstlisting}

vendor/phpdocumentor/guides/resources/template/tex/body/image.tex.twig

@@ -0,0 +1 @@
+\includegraphics{{ '{' }}{{ node.url }}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/body/list/list-item.tex.twig

@@ -0,0 +1 @@
+\item {{ text|raw }}

vendor/phpdocumentor/guides/resources/template/tex/body/list/list.tex.twig

@@ -0,0 +1,12 @@
+{% set keyword = 'itemize' %}
+
+{% if node.isOrdered %}
+    {% set enumerate = 'ol' %}
+{% endif %}
+
+
+\begin{{ '{' }}{{ keyword }}{{ '}' }}
+    {% for item in node.items %}
+        {{ renderNode(item) }}
+    {% endfor %}
+\end{{ '{' }}{{ keyword }}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/body/paragraph.tex.twig

@@ -0,0 +1,5 @@
+{%- set text = renderNode(node.value) -%}
+
+{%- if text|trim %}
+    {{- text|raw -}}
+{% endif -%}

vendor/phpdocumentor/guides/resources/template/tex/body/quote.tex.twig

@@ -0,0 +1,3 @@
+\begin{quotation}
+{{ renderNode(node.value) }}
+\end{quotation}

vendor/phpdocumentor/guides/resources/template/tex/body/separator.tex.twig

@@ -0,0 +1 @@
+\ \

vendor/phpdocumentor/guides/resources/template/tex/body/toc/toc.tex.twig

@@ -0,0 +1,4 @@
+\tableofcontents
+{% for tocItem in tocItems %}
+\input{{ '{' }}{{ tocItem.url }}{{ '}' }}
+{% endfor %}

vendor/phpdocumentor/guides/resources/template/tex/guides/inline/br.tex.twig

@@ -0,0 +1 @@
+\\\\\\\\\n

vendor/phpdocumentor/guides/resources/template/tex/guides/inline/emphasis.tex.twig

@@ -0,0 +1 @@
+\textit{{ '{' }}{{ text|raw }}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/guides/inline/link.tex.twig

@@ -0,0 +1,5 @@
+{% if type == 'ref' %}
+\ref{{ '{' }}{{ url }}{{ '}' }}
+{% else %}
+\href{{ '{' }}{{ url }}{{ '}' }}{{ '{' }}{{ title }}{{ '}' }}
+{% endif %}

vendor/phpdocumentor/guides/resources/template/tex/guides/inline/literal.tex.twig

@@ -0,0 +1 @@
+\verb|{{ node.value|raw }}|

vendor/phpdocumentor/guides/resources/template/tex/guides/inline/nbsp.tex.twig

@@ -0,0 +1 @@
+~

vendor/phpdocumentor/guides/resources/template/tex/guides/inline/strong-emphasis.tex.twig

@@ -0,0 +1 @@
+\textbf{{ '{' }}{{ text|raw }}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/guides/structure/header/title.tex.twig

@@ -0,0 +1 @@
+\{{ type }}{{ '{' }}{{ renderNode(titleNode.value) }}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/inline/inline-node.tex.twig

@@ -0,0 +1,3 @@
+{%- for child in node.children -%}
+    {{- renderNode(child) -}}
+{%- endfor -%}

vendor/phpdocumentor/guides/resources/template/tex/inline/literal.tex.twig

@@ -0,0 +1 @@
+\texttt{{ '{' }}{{- node.value -}}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/inline/plain-text.tex.twig

@@ -0,0 +1 @@
+{{- node.value -}}

vendor/phpdocumentor/guides/resources/template/tex/inline/textroles/generic.tex.twig

@@ -0,0 +1,4 @@
+{%- include  [
+    ('inline/textroles/' ~ node.type ~ '.tex.twig'),
+    'inline/textroles/unknown.tex.twig'
+    ]  -%}

vendor/phpdocumentor/guides/resources/template/tex/inline/textroles/unknown.tex.twig

@@ -0,0 +1 @@
+\texttt{{ '{' }}{{- node.value -}}{{ '}' }}

vendor/phpdocumentor/guides/resources/template/tex/structure/document.tex.twig

@@ -0,0 +1,3 @@
+{%- for child in node.children ~%}
+    {{ renderNode(child) }}
+{%~ endfor -%}

vendor/phpdocumentor/guides/resources/template/tex/structure/header-title.tex.twig

@@ -0,0 +1,4 @@
+{%- set headingLevel = node.level -%}
+\{% if headingLevel == 1 %}section{% elseif headingLevel == 2 %}subsection{% elseif headingLevel == 3 %}subsubsection{% elseif headingLevel == 4 %}paragraph{% elseif headingLevel == 5 %}subparagraph{% elseif headingLevel == 6 %}subparagraph{% endif %}{
+{{- renderNode(node.value) -}}
+}

vendor/phpdocumentor/guides/resources/template/tex/structure/project.tex.twig

@@ -0,0 +1,17 @@
+\documentclass[11pt]{report}
+\usepackage[utf8]{inputenc}
+\usepackage[T1]{fontenc}
+\usepackage[french]{babel}
+\usepackage{cite}
+\usepackage{amssymb}
+\usepackage{amsmath}
+\usepackage{mathrsfs}
+\usepackage{graphicx}
+\usepackage{hyperref}
+\usepackage{listings}
+\begin{document}
+\label{{ '{' }}{{ document.environment.url}}{{ '}' }}
+{%- for document in documents -%}
+{{ renderNode(document) }}
+{%- endfor -%}
+\end{document}

vendor/phpdocumentor/guides/resources/template/tex/structure/section.tex.twig

@@ -0,0 +1,3 @@
+{% for childNode in node.children %}
+    {{ renderNode(childNode) }}
+{% endfor %}

vendor/phpdocumentor/guides/resources/template/tex/template.php

@@ -0,0 +1,110 @@
+<?php
+
+declare(strict_types=1);
+
+use phpDocumentor\Guides\Nodes\AnchorNode;
+use phpDocumentor\Guides\Nodes\AnnotationListNode;
+use phpDocumentor\Guides\Nodes\CitationNode;
+use phpDocumentor\Guides\Nodes\CodeNode;
+use phpDocumentor\Guides\Nodes\DefinitionListNode;
+use phpDocumentor\Guides\Nodes\DefinitionLists\DefinitionNode;
+use phpDocumentor\Guides\Nodes\DocumentNode;
+use phpDocumentor\Guides\Nodes\FieldListNode;
+use phpDocumentor\Guides\Nodes\FigureNode;
+use phpDocumentor\Guides\Nodes\FootnoteNode;
+use phpDocumentor\Guides\Nodes\ImageNode;
+use phpDocumentor\Guides\Nodes\Inline\AbbreviationInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\CitationInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\DocReferenceNode;
+use phpDocumentor\Guides\Nodes\Inline\EmphasisInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\FootnoteInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\GenericTextRoleInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\HyperLinkNode;
+use phpDocumentor\Guides\Nodes\Inline\ImageInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\LiteralInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\NewlineInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\PlainTextInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\ReferenceNode;
+use phpDocumentor\Guides\Nodes\Inline\StrongInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\VariableInlineNode;
+use phpDocumentor\Guides\Nodes\Inline\WhitespaceInlineNode;
+use phpDocumentor\Guides\Nodes\InlineCompoundNode;
+use phpDocumentor\Guides\Nodes\ListItemNode;
+use phpDocumentor\Guides\Nodes\ListNode;
+use phpDocumentor\Guides\Nodes\LiteralBlockNode;
+use phpDocumentor\Guides\Nodes\Metadata\AddressNode;
+use phpDocumentor\Guides\Nodes\Metadata\AuthorNode;
+use phpDocumentor\Guides\Nodes\Metadata\AuthorsNode;
+use phpDocumentor\Guides\Nodes\Metadata\ContactNode;
+use phpDocumentor\Guides\Nodes\Metadata\CopyrightNode;
+use phpDocumentor\Guides\Nodes\Metadata\DateNode;
+use phpDocumentor\Guides\Nodes\Metadata\MetaNode;
+use phpDocumentor\Guides\Nodes\Metadata\NoCommentsNode;
+use phpDocumentor\Guides\Nodes\Metadata\NoSearchNode;
+use phpDocumentor\Guides\Nodes\Metadata\OrganizationNode;
+use phpDocumentor\Guides\Nodes\Metadata\OrphanNode;
+use phpDocumentor\Guides\Nodes\Metadata\RevisionNode;
+use phpDocumentor\Guides\Nodes\Metadata\TocDepthNode;
+use phpDocumentor\Guides\Nodes\Metadata\TopicNode;
+use phpDocumentor\Guides\Nodes\Metadata\VersionNode;
+use phpDocumentor\Guides\Nodes\ParagraphNode;
+use phpDocumentor\Guides\Nodes\QuoteNode;
+use phpDocumentor\Guides\Nodes\SectionNode;
+use phpDocumentor\Guides\Nodes\SeparatorNode;
+use phpDocumentor\Guides\Nodes\TitleNode;
+
+return [
+    AnchorNode::class => 'inline/anchor.tex.twig',
+    FigureNode::class => 'body/figure.tex.twig',
+    MetaNode::class => 'structure/header/meta.tex.twig',
+    ParagraphNode::class => 'body/paragraph.tex.twig',
+    QuoteNode::class => 'body/quote.tex.twig',
+    SeparatorNode::class => 'body/separator.tex.twig',
+    TitleNode::class => 'structure/header-title.tex.twig',
+    SectionNode::class => 'structure/section.tex.twig',
+    DocumentNode::class => 'structure/document.tex.twig',
+    ImageNode::class => 'body/image.tex.twig',
+    CodeNode::class => 'body/code.tex.twig',
+    DefinitionListNode::class => 'body/definition-list.tex.twig',
+    DefinitionNode::class => 'body/definition.tex.twig',
+    FieldListNode::class => 'body/field-list.tex.twig',
+    ListNode::class => 'body/list/list.tex.twig',
+    ListItemNode::class => 'body/list/list-item.tex.twig',
+    LiteralBlockNode::class => 'body/literal-block.tex.twig',
+    CitationNode::class => 'body/citation.tex.twig',
+    FootnoteNode::class => 'body/footnote.tex.twig',
+    AnnotationListNode::class => 'body/annotation-list.tex.twig',
+    // Inline
+    ImageInlineNode::class => 'inline/image.tex.twig',
+    InlineCompoundNode::class => 'inline/inline-node.tex.twig',
+    AbbreviationInlineNode::class => 'inline/textroles/abbreviation.tex.twig',
+    CitationInlineNode::class => 'inline/citation.tex.twig',
+    DocReferenceNode::class => 'inline/doc.tex.twig',
+    EmphasisInlineNode::class => 'inline/emphasis.tex.twig',
+    FootnoteInlineNode::class => 'inline/footnote.tex.twig',
+    HyperLinkNode::class => 'inline/link.tex.twig',
+    LiteralInlineNode::class => 'inline/literal.tex.twig',
+    NewlineInlineNode::class => 'inline/newline.tex.twig',
+    WhitespaceInlineNode::class => 'inline/nbsp.tex.twig',
+    PlainTextInlineNode::class => 'inline/plain-text.tex.twig',
+    ReferenceNode::class => 'inline/ref.tex.twig',
+    StrongInlineNode::class => 'inline/strong.tex.twig',
+    VariableInlineNode::class => 'inline/variable.tex.twig',
+    GenericTextRoleInlineNode::class => 'inline/textroles/generic.tex.twig',
+    // Output as Metatags
+    AuthorNode::class => 'structure/header/author.tex.twig',
+    CopyrightNode::class => 'structure/header/copyright.tex.twig',
+    DateNode::class => 'structure/header/date.tex.twig',
+    NoSearchNode::class => 'structure/header/no-search.tex.twig',
+    TopicNode::class => 'structure/header/topic.tex.twig',
+    // No output in page header in tex - might be output in i.e. LaTex
+    AddressNode::class => 'structure/header/blank.tex.twig',
+    AuthorsNode::class => 'structure/header/blank.tex.twig',
+    ContactNode::class => 'structure/header/blank.tex.twig',
+    NoCommentsNode::class => 'structure/header/blank.tex.twig',
+    OrganizationNode::class => 'structure/header/blank.tex.twig',
+    OrphanNode::class => 'structure/header/blank.tex.twig',
+    RevisionNode::class => 'structure/header/blank.tex.twig',
+    TocDepthNode::class => 'structure/header/blank.tex.twig',
+    VersionNode::class => 'structure/header/blank.tex.twig',
+];