refactor: Cleanup git state - commit all staged changes

Major refactoring cleanup:
- Add new controller architecture (class-controller-*.php)
- Add new settings-v2 UI (views/settings-v2/)
- Add new CSS architecture (agentic-sidebar.css, tokens)
- Add esbuild build pipeline (scripts/build.js, package.json)
- Add composer dependencies (vendor/)
- Add frontend src directory (assets/js/src/index.jsx)
- Add documentation files
- Remove old/obsolete files (class-settings.php, old CSS)

This commits all pending changes from previous refactoring efforts.

vendor/phpdocumentor/graphviz/psalm.xml

@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<psalm
+        resolveFromConfigFile="true"
+        xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+        xmlns="https://getpsalm.org/schema/config"
+        xsi:schemaLocation="https://getpsalm.org/schema/config vendor/vimeo/psalm/config.xsd"
+        errorLevel="1"
+>
+    <projectFiles>
+        <directory name="src" />
+        <ignoreFiles>
+            <directory name="vendor" />
+        </ignoreFiles>
+    </projectFiles>
+
+    <issueHandlers>
+        <LessSpecificReturnType errorLevel="info" />
+
+        <MissingDependency errorLevel="info" />
+        <MixedArgumentTypeCoercion>
+            <errorLevel type="suppress">
+                <file name="src/phpDocumentor/GraphViz/Graph.php" />
+            </errorLevel>
+        </MixedArgumentTypeCoercion>
+    </issueHandlers>
+</psalm>